How to fix database disk image is malform

Hi,
How to fix in this errot:
ERROR: unexpected error - database disk image is malformed

Hi @merve . Please post $ dvc doctor output and add -v to the command that gave you that error and post full log for it.


2021-03-01 18:26:19,932 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,932 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,932 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,933 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/fd/bcaeb97ec78f1f769ed86daaa47f5b’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/34/8b4f28c78afc5c8bd17a4c44bca6f4’ is unchanged since it is read-only
2021-03-01 18:26:19,934 DEBUG: Assuming ‘/home/issd/.dvc/cache/50/125ec853355732ca7ba36dfbee759e’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/b2/7d2a2599b431b51c456ab828300dd4’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/c7/fc45a4f47a6764f1efb1376c5d0d56’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/c1/fa6762bd8a289d8f84b86de6a99d30’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/b5/4a2a2c78cb87324be68119258146a9’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/73/12baf37cc83f4b19dcfc4d0884ba7d’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/3d/6233dc79c74063b7bd9ea90eee5300’ is unchanged since it is read-only
2021-03-01 18:26:19,935 DEBUG: Assuming ‘/home/issd/.dvc/cache/97/1524f85e560709b71ffe28dfc6014c’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,936 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,937 DEBUG: Assuming ‘/home/issd/.dvc/cache/ae/385509503eb52989789d5627a3c3aa’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/f9/1a03e0e8cd30be73e407771515a1ac’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/04/a312b03bb10807962e3d21e0b2345d’ is unchanged since it is read-only
2021-03-01 18:26:19,938 DEBUG: Assuming ‘/home/issd/.dvc/cache/b1/3ddd277a4d00eba53080e783d9e1c0’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/77/379a250fc5405c4ff09f28448bc0b7’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/57/cd0fd0340d8f16ba3a929bc84a3d67’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,939 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/61/b8bc15abefa474dc41678c4921f40a’ is unchanged since it is read-only
2021-03-01 18:26:19,940 DEBUG: Assuming ‘/home/issd/.dvc/cache/45/7469cf0c84dff9fcf1aa5619db16d1’ is unchanged since it is read-only
2021-03-01 18:26:19,941 DEBUG: Assuming ‘/home/issd/.dvc/cache/28/a368342a05839b68282a10c4df55f0’ is unchanged since it is read-only
2021-03-01 18:26:22,134 DEBUG: Path ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02’ inode ‘704446465’
2021-03-01 18:26:22,135 DEBUG: fetched: [(‘68b163ddca4cab63fbb57661fce485da’, ‘1256073424’, ‘7b06542fa765ea71f585c8f0a7ff401e.dir’, ‘1614622753215537408’)]
2021-03-01 18:26:22,139 DEBUG: Assuming ‘/home/issd/.dvc/cache/7b/06542fa765ea71f585c8f0a7ff401e.dir’ is unchanged since it is read-only
2021-03-01 18:26:22,142 DEBUG: Saving ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02’ to ‘.dvc/cache/7b/06542fa765ea71f585c8f0a7ff401e.dir’.
2021-03-01 18:26:22,143 DEBUG: Assuming ‘/home/issd/.dvc/cache/7b/06542fa765ea71f585c8f0a7ff401e.dir’ is unchanged since it is read-only
2021-03-01 18:26:22,143 DEBUG: Assuming ‘/home/issd/.dvc/cache/a1/4241ccf2999bc5c8ec3c7096ea7d0a’ is unchanged since it is read-only
2021-03-01 18:26:22,262 DEBUG: Cache type ‘reflink’ is not supported: reflink is not supported
2021-03-01 18:26:22,264 DEBUG: Created ‘copy’: .dvc/cache/.cache_type_test_file → dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/.EPYcYwH5t94MmHMwKib8J6
2021-03-01 18:26:22,265 DEBUG: Removing ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/.EPYcYwH5t94MmHMwKib8J6’
2021-03-01 18:26:22,265 DEBUG: Removing ‘/home/issd/.dvc/cache/.cache_type_test_file’
2021-03-01 18:26:22,265 DEBUG: Skipping copying for ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/2.avi’, since it is not a symlink or a hardlink.
2021-03-01 18:26:22,266 DEBUG: Path ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/2.avi’ inode ‘704446468’
2021-03-01 18:26:22,266 DEBUG: fetched: [(‘1614611664072704256’, ‘1048658318’, ‘a14241ccf2999bc5c8ec3c7096ea7d0a’, ‘1614622753226607616’)]
2021-03-01 18:26:22,267 DEBUG: Path ‘.dvc/cache/a1/4241ccf2999bc5c8ec3c7096ea7d0a’ inode ‘271620’
2021-03-01 18:26:22,267 DEBUG: fetched: [(‘1614173000334131200’, ‘1048658318’, ‘a14241ccf2999bc5c8ec3c7096ea7d0a’, ‘1614622753226980352’)]
2021-03-01 18:26:22,267 DEBUG: Assuming ‘/home/issd/.dvc/cache/bb/edcd847daadf290f1277ab78cab0b0’ is unchanged since it is read-only
2021-03-01 18:26:22,268 DEBUG: Skipping copying for ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/SC_02.json’, since it is not a symlink or a hardlink.
2021-03-01 18:26:22,268 DEBUG: Path ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/SC_02.json’ inode ‘704446469’
2021-03-01 18:26:22,268 DEBUG: fetched: [(‘1614611664120704512’, ‘1536261’, ‘bbedcd847daadf290f1277ab78cab0b0’, ‘1614622753227555584’)]
2021-03-01 18:26:22,269 DEBUG: Path ‘.dvc/cache/bb/edcd847daadf290f1277ab78cab0b0’ inode ‘271622’
2021-03-01 18:26:22,269 DEBUG: fetched: [(‘1614173000390131968’, ‘1536261’, ‘bbedcd847daadf290f1277ab78cab0b0’, ‘1614622753227661056’)]
2021-03-01 18:26:22,269 DEBUG: Assuming ‘/home/issd/.dvc/cache/02/6f88e275bf4909df069d793c2e60f2’ is unchanged since it is read-only
2021-03-01 18:26:22,269 DEBUG: Skipping copying for ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame10000.jpg’, since it is not a symlink or a hardlink.
2021-03-01 18:26:22,270 DEBUG: Path ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame10000.jpg’ inode ‘779321500’
2021-03-01 18:26:22,270 DEBUG: fetched: [(‘1614611664260704000’, ‘128359’, ‘026f88e275bf4909df069d793c2e60f2’, ‘1614622753228241152’)]
2021-03-01 18:26:22,271 DEBUG: Path ‘.dvc/cache/02/6f88e275bf4909df069d793c2e60f2’ inode ‘271623’
2021-03-01 18:26:22,271 DEBUG: fetched: [(‘1614173000402131968’, ‘128359’, ‘026f88e275bf4909df069d793c2e60f2’, ‘1614622753228406784’)]
2021-03-01 18:26:22,271 DEBUG: Assuming ‘/home/issd/.dvc/cache/7c/4967cfff4e8bfac7c9562fdccfb1bc’ is unchanged since it is read-only
2021-03-01 18:26:22,271 DEBUG: Skipping copying for ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame100000.jpg’, since it is not a symlink or a hardlink.
2021-03-01 18:26:22,272 DEBUG: Path ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame100000.jpg’ inode ‘779321501’
2021-03-01 18:26:22,272 DEBUG: fetched: [(‘1614611664268704000’, ‘134209’, ‘7c4967cfff4e8bfac7c9562fdccfb1bc’, ‘1614622753228962304’)]
2021-03-01 18:26:22,272 DEBUG: Path ‘.dvc/cache/7c/4967cfff4e8bfac7c9562fdccfb1bc’ inode ‘271624’
2021-03-01 18:26:22,273 DEBUG: fetched: [(‘1614173000414132480’, ‘134209’, ‘7c4967cfff4e8bfac7c9562fdccfb1bc’, ‘1614622753229066240’)]
2021-03-01 18:26:22,273 DEBUG: Assuming ‘/home/issd/.dvc/cache/b6/239e20a793a9d496d24dd3778495c9’ is unchanged since it is read-only
2021-03-01 18:26:22,274 DEBUG: Skipping copying for ‘/home/issd/dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame100100.jpg’, since it is not a symlink or a hardlink.
2021-03-01 18:26:22,274 DEBUG: Path ‘dataset/DATASETS/READY/TRAIN/PEDESTRIAN/SMARTCARD/VERSION1/02/images/PED-SC-02_V1-frame100100.jpg’ inode ‘779321502’
2021-03-01 18:26:22,275 DEBUG: fetched: [(5710,)]
2021-03-01 18:26:22,371 ERROR: unexpected error - database disk image is malformed